I created a custom character in the character creator section.  I used the "dummy" actor and replaced the sprites I needed with my custom character.
I aligned his bones, and adjusted all the joint masks.  I only currently have the 0 degree view.  I went to the top under Modify, then selected both "turn on multi angle character" and then Confirm multi anglesettings"
When I go to "callibration"  the character Looks amazing.  Everything works great. 
The moment I click "back to stage"  all of a sudden my characters body parts are misaligned. Even without having any animations added. 
What am i doing wrong?